Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
TGCT rs4801803 chr19:37966923 A/G 1.37E-13 134 17.1 37.53 45.47 KM Plot
TGCT rs4802236 chr19:37919246 A/G 2.27E-13 132 45.83 36.12 17.1 KM Plot
TGCT rs4802766 chr19:37981933 T/C 1.78E-13 133 46.3 35.03 17.1 KM Plot
TGCT rs4802889 chr19:37990104 G/A 1.78E-13 133 46.3 35.03 17.1 KM Plot
TGCT rs4806021 chr19:34970086 T/C 3.97E-5 132 43.03 46.77 40.57 KM Plot
TGCT rs482731 chr13:21846075 G/A 5.93E-7 132 46.3 36.7 14.42 KM Plot
TGCT rs483893 chr17:39340826 T/C 6.24E-7 134 13.17 46.03 42.18 KM Plot
TGCT rs483929 chr17:39340812 T/C 6.24E-7 134 13.17 46.03 42.18 KM Plot
TGCT rs4839913 chr6:98019234 C/G 8.92E-5 132 37.75 60.73 1.4 KM Plot
TGCT rs484365 chr13:21845944 G/T 5.93E-7 132 46.3 36.7 14.42 KM Plot
TGCT rs4851196 chr2:99858556 A/G 0.000111 134 30.55 56.7 42.27 KM Plot
TGCT rs485361 chr13:21845826 G/T 5.93E-7 132 46.3 36.7 14.42 KM Plot
TGCT rs4871341 chr8:124078080 C/G 6.29E-5 133 37.3 49.93 56.7 KM Plot
TGCT rs487167 chr3:172421624 T/G 1.66E-5 132 45.47 37.42 24.15 KM Plot
TGCT rs4885478 chr13:78233793 T/C 1.1E-5 132 15.7 35.37 42.18 KM Plot